---------------------------------------------------------------------------------------------------------- MENDELIAN SAMPLING VARIANCE TEST Version 3.0 released 2018-16-5 A.-M. Tyrisevä*, W.F. Fikse#, M.H. Lidauer* *Animal Genetics, Natural Resources Institute Finland (LUKE), 31600 Jokioinen, Finland #Växa Sverige, 75105 Uppsala, Sweden ---------------------------------------------------------------------------------------------------------- Date: 2019/09/27 Time: 10:18:40 ---------- INPUT DATA ---------- Name of the datafile: data.txt Number of traits in the data file: 1 All traits in the datafile are analyzed: scs Number of years included in the analysis: 12 First year: 2003 Last year: 2014 The first row of the data file: SK000800860031 NL000428213639 SK000800012886 2009 3.4380 3.0880 3.4571 0.7962 0.9171 0.6303 The second row of the data file: SK000800860068 US000133618576 SK000520272207 2009 2.9880 2.9980 3.3628 0.8386 0.9338 0.5887 Preliminary data check: After excluding animals with missing parents and those having their birth year outside the defined time window, number of animals accepted in the analysis: 295 ---------------- ANALYSIS RESULTS ---------------- TRAIT: scs Estimated Mendelian Outlier test: N Genetic Sampling MS mean / Lower Upper Year Animals Variance Mean sqrt(G) Limit Limit ---------------------------------------------------------------------------------------- 2003 32 0.26861 0.20817E-01 0.04 0.10280 0.50603 2004 43 0.28290 -0.96600E-01 -0.17 0.12058 0.60409 2005 23 0.48312 0.34846E-01 0.06 0.20723 0.80500 2006 25 0.32506 -0.87592E-01 -0.16 0.11287 0.58387 2007 24 0.33680 -0.98058E-01 -0.18 0.14758 0.57829 2008 21 0.25123 -0.76079E-01 -0.14 0.66985E-01 0.49346 2009 28 0.32795 -0.51932E-01 -0.09 0.13561 0.63823 2010 26 0.31201 -0.45285E-01 -0.08 0.13900 0.51335 2011 23 0.27405 -0.43457E-01 -0.08 0.63323E-01 0.57290 2012 17 0.26045 -0.59844E-01 -0.11 0.43332E-01 0.61700 2013 15 0.30606 -0.32920E-01 -0.06 0.82214E-01 0.57848 2014 15 0.38780 0.23997E-01 0.04 0.88020E-01 1.0133 ---------------------------------------------------------------------------------------- Total number of the animals in the analysis: 292 Average genetic variance: 0.31242 Average MS mean: -0.42676E-01 ESTIMATED TREND IN THE GENETIC VARIANCE --------------------------------------- Regression coefficients (B0, B1) of the weighted linear regression on year. B0: 0.31462 B1: -0.5672E-04 Yearly trend (% relative to genetic variance): -0.02 Empirical 95% confidence interval: Lower limit: -5.3 Upper limit: 5.3 Trend did not deviate statistically significantly from zero. OUTLIER TEST: -------------- 95% confidence intervals for the yearly genetic variance estimates. The confidence intervals should include the average genetic variance: 0.31242 Outliers exceeding the statistical and tolerated thresholds are marked with "failed". ---------------------------------------------------------------------------------------------------------- Date: 2019/09/27 Time: 10:18:40