---------------------------------------------------------------------------------------------------------- MENDELIAN SAMPLING VARIANCE TEST Version 3.0 released 2018-16-5 A.-M. Tyrisevä*, W.F. Fikse#, M.H. Lidauer* *Animal Genetics, Natural Resources Institute Finland (LUKE), 31600 Jokioinen, Finland #Växa Sverige, 75105 Uppsala, Sweden ---------------------------------------------------------------------------------------------------------- Date: 2019/09/27 Time: 10:22:23 ---------- INPUT DATA ---------- Name of the datafile: data.txt Number of traits in the data file: 1 All traits in the datafile are analyzed: scs Number of years included in the analysis: 12 First year: 2003 Last year: 2014 The first row of the data file: CZ000009592942 NL000177162484 CZ000104808406 2004 3.3943 3.3780 3.1359 0.5775 0.5901 0.2092 The second row of the data file: CZ000140523981 CZ000113838181 CZ000113997981 2006 2.4633 2.8580 2.8774 0.1824 0.3435 0.2807 Preliminary data check: After excluding animals with missing parents and those having their birth year outside the defined time window, number of animals accepted in the analysis: 276747 ---------------- ANALYSIS RESULTS ---------------- TRAIT: scs Estimated Mendelian Outlier test: N Genetic Sampling MS mean / Lower Upper Year Animals Variance Mean sqrt(G) Limit Limit ---------------------------------------------------------------------------------------- 2003 12195 0.69713 -0.1304E-01 -0.02 0.67020 0.72335 2004 11984 0.71181 -0.1403E-01 -0.02 0.68714 0.73722 2005 12070 0.70324 -0.1935E-01 -0.02 0.67363 0.73014 2006 12250 0.69523 -0.2216E-01 -0.03 0.66699 0.72010 2007 11719 0.70731 -0.1226E-01 -0.01 0.67939 0.73545 2008 8778 0.80742 -0.1737E-01 -0.02 0.77855 0.84807 FAILED 2009 11553 0.69099 -0.1361E-01 -0.02 0.66603 0.72179 2010 10259 0.69180 -0.1701E-01 -0.02 0.66272 0.72105 2011 10363 0.72394 -0.7945E-02 -0.01 0.69360 0.75459 2012 10631 0.70947 -0.1066E-01 -0.01 0.68270 0.73771 2013 10177 0.68709 -0.1586E-01 -0.02 0.65703 0.72159 2014 10155 0.70675 -0.6521E-02 -0.01 0.67168 0.73854 ---------------------------------------------------------------------------------------- Total number of the animals in the analysis: 132134 Average genetic variance: 0.70866 Average MS mean: -0.14152E-01 ESTIMATED TREND IN THE GENETIC VARIANCE --------------------------------------- Regression coefficients (B0, B1) of the weighted linear regression on year. B0: 0.70978 B1: -0.1132E-03 Yearly trend (% relative to genetic variance): -0.02 Empirical 95% confidence interval: Lower limit: -0.2 Upper limit: 0.2 Trend did not deviate statistically significantly from zero. OUTLIER TEST: -------------- 95% confidence intervals for the yearly genetic variance estimates. The confidence intervals should include the average genetic variance: 0.70866 Outliers exceeding the statistical and tolerated thresholds are marked with "failed". ---------------------------------------------------------------------------------------------------------- Date: 2019/09/27 Time: 10:22:54